TraceBase

TraceBase is a data repository and analysis tool for mass-spectrometry data from isotope tracing studies used to quantify metabolism in vivo. Lab members submit data corrected for natural isotope abundance (by AccuCor or IsoCorr), along with details about their experiment. TraceBase organizes this data and computes useful metrics such as enrichment, normalized labeling, and FCirc. Data on TraceBase is easy to browse, collate, compare, and download.

Overview

Slideshow introduction: 221011_tracebase REintroduction to lab.pptx

Structure of TraceBase for the Researcher

Navigating TraceBase

Glossary of Calculated Values

Uploading to TraceBase

How to Upload

Input Data for TraceBase Upload

Sample Information Sheet

Labeling and Organizing Data

Downloading from TraceBase

How to Download

Downloaded Data Formats

How do I analyze data downloaded from TraceBase?

Example_compare isotopomer labeling from glucose across studies

Example_compare normalized labeling from glucose across studies

Contact Developers and Additional Links

People Who Contributed to TraceBase Development

GitHub Repository

• Report a bug on GitHub

Provide feedback in a google form